VISDB Viral Integration Site DataBase

VIS ID

TVIS30004448

Fusion event

HIV-SENP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.11

Reference genome

Start

End

48456827/48063044 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-133a-3p ; hsa-mir-183-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-18a-3p ; hsa-mir-138-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-1277-5p ; hsa-mir-297 ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-590-3p ; hsa-mir-3191-5p ; hsa-mir-5571-5p ; hsa-mir-6885-3p ; hsa-mir-5579-3p ; hsa-mir-4694-5p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-5009-3p ; hsa-mir-3124-3p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-4768-3p ; hsa-mir-1264 ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-145-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/698775; hsa-let-7i/Downstream/69753;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/57455, chr12-CpG: 65/Downstream/42636

Upstream sequence

TCCACAGCTGTGAAGCTTGAGTATACCCAGATTAGCCAGGGATGCTTATGCAAAGAAGGTACTTAGGAAAAGATACCCAACCCAGTTTTCTTTTGCTGTA

Downstream sequence

AAAATAACCTTCTAAAATAAAACAGGTACCTACAGGTTTAGGCTTAGGAACAGATCAGTTTAAAAACTGTAGTGTAATTAATATACTTAAAATAAATTGG