VISDB Viral Integration Site DataBase

VIS ID

TVIS30004449

Fusion event

HIV-CCNT1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.12

Reference genome

Start

End

49099345/48705562 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-198 ; hsa-mir-27b-3p ; hsa-mir-1250-3p ; hsa-mir-548c-3p ; hsa-mir-362-5p ; hsa-mir-500b-5p ; hsa-mir-3128 ; hsa-mir-485-5p ; hsa-mir-3188 ; hsa-mir-3975 ; hsa-mir-2467-5p ; hsa-mir-4802-5p ; hsa-mir-6884-5p ; hsa-mir-3611 ; hsa-mir-4531 ; hsa-mir-6509-5p ; hsa-mir-6818-5p ; hsa-mir-6802-5p ; hsa-mir-6800-5p ; hsa-mir-6867-5p ; hsa-mir-6766-5p ; hsa-mir-3650 ; hsa-mir-6756-5p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-2467-3p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-6514-5p ; hsa-mir-8076 ; hsa-mir-5583-3p ; hsa-mir-562 ; hsa-mir-4802-3p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-153-5p ; hsa-mir-6867-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-6809-5p ; hsa-mir-4326 ; hsa-mir-31-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-1266-3p ; hsa-mir-5699-3p ; hsa-mir-6748-3p ; hsa-mir-4421 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-5697 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-649 ; hsa-mir-4642 ; hsa-mir-3622b-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-8060 ; hsa-mir-500a-5p ; hsa-mir-4668-3p ; hsa-mir-320e ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-3190-5p ; hsa-mir-335-5p ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-3681-3p ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-544b ; hsa-mir-548s ; hsa-mir-6765-3p ; hsa-mir-6849-3p ; hsa-mir-7162-3p

Nearest miRNA

hsa-mir-1244-3/Upstream/51032; hsa-let-7i/Downstream/66413;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/23044, chr12-CpG: 66/Downstream/10710

Upstream sequence

gggtcttgctatgttgtccaggttggtcttaaacttctggcctaaagtgattctcccaccttaccctcccaaagtgctaggattacaggtatggtgagcc

Downstream sequence

accatacctggccTGATTTTCTTACTGTTAAGAAAAACACAAACACTAAAATATTCTTTTAACAACACCAATCTAAACTTCAATAAATCGAAGTTATAAA