VISDB Viral Integration Site DataBase

VIS ID

TVIS30004451

Fusion event

HIV-TMBIM6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.12

Reference genome

Start

End

50141477/49747694 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-mir-484 ; hsa-mir-186-5p ; hsa-mir-19b-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-4533 ; hsa-mir-6782-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-144-3p ; hsa-mir-513a-5p ; hsa-mir-4293 ; hsa-mir-7156-3p ; hsa-mir-19a-3p ; hsa-mir-363-5p ; hsa-mir-423-5p ; hsa-mir-608 ; hsa-mir-651-3p ; hsa-mir-1252-3p ; hsa-mir-1914-3p ; hsa-mir-3184-5p ; hsa-mir-3190-3p ; hsa-mir-4428 ; hsa-mir-4651 ; hsa-mir-5093 ; hsa-mir-5194 ; hsa-mir-548aw ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6745 ; hsa-mir-4424 ; hsa-mir-362-3p ; hsa-mir-335-3p ; hsa-mir-450a-1-3p ; hsa-mir-329-3p ; hsa-mir-589-3p ; hsa-mir-3153 ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-8066 ; hsa-mir-4487 ; hsa-mir-551b-5p ; hsa-mir-708-3p ; hsa-mir-3160-3p ; hsa-mir-4451 ; hsa-mir-4536-5p ; hsa-mir-4796-3p ; hsa-mir-6508-5p ; hsa-mir-6832-5p ; hsa-mir-7844-5p ; hsa-mir-8067 ; hsa-mir-485-5p ; hsa-mir-6884-5p ; hsa-mir-3975 ; hsa-mir-5186 ; hsa-mir-218-5p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-3649 ; hsa-mir-8077 ; hsa-mir-3188 ; hsa-mir-2467-5p ; hsa-mir-4645-3p ; hsa-mir-4682 ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4668-5p ; hsa-mir-3202 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-4735-5p ; hsa-mir-4528 ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-511-5p ; hsa-mir-6740-3p ; hsa-mir-558 ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-216a-3p ; hsa-mir-3681-3p ; hsa-mir-128-3p ; hsa-mir-656-3p ; hsa-mir-140-3p ; hsa-mir-188-3p ; hsa-mir-4433a-5p ; hsa-mir-5588-3p ; hsa-mir-6075 ; hsa-mir-873-5p ; hsa-mir-933

Nearest miRNA

hsa-mir-1244-3/Upstream/975657; hsa-let-7i/Downstream/486448;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/5434, chr12-CpG: 22/Downstream/47178

Upstream sequence

cattgtgcatggccTTTTTCCTTTTTTGTTTTTTGGAAGTGAACATAACCTTGAGACTTTATTGTCTTCATAATAAAACATAAACTGATATTTAATTAAA

Downstream sequence

TGTGCGAACAGTGTTTCTTTGACTTGCTGTTTTAATGTTGCTGTACACACTGAGGCAAAGTCTGTCTTGGCTCCAGCATTGCATAGAACGCATACTAAAT