Basic Information
VIS ID
TVIS30004454
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
54046297/53652513 (Hg38)
End
54046297/53652513 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA12A
Nearest miRNA
hsa-mir-1244-3/Upstream/595501; hsa-let-7i/Downstream/339225;
Nearest TSS
ENST00000382841/Upstream/26103; ENST00000566418/Downstream/16699;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/26014, chr12-CpG: 112/Downstream/23328
Nearby gene
ATP5MC2(No orient, 12647)
Upstream sequence
atagttttataaaacttcaatttctgattgtttttgctagtatataaaaatataattgattttgttgttgtgtttggagacaggatctcattttgccacg
Downstream sequence
caggctggagtgcagtggtgcaatcatagcctggacctcctgggctcttcctgcctcagcctcttgggtagctgagaccacaggtatgcaccaccatgcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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