Basic Information
VIS ID
TVIS30004458
Fusion event
HIV-PTGES3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
57069791/56676007 (Hg38)
End
57069791/56676007 (Hg38)
Orient
-
Location type
Intronic
Target gene
PTGES3
miRNAs that regulate target gene
hsa-mir-744-5p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-4709-5p ; hsa-mir-3668 ; hsa-mir-186-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/2338693; hsa-let-7i/Downstream/518497;
Nearest TSS
ENST00000382841/Upstream/29939; ENST00000556481/Downstream/11990;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/29968, chr12-CpG: 112/Downstream/11499
Upstream sequence
gtgaaactccgtctcaaaacacaacacaaaaaCTGCAgaccaggcgcagtgactcaagcccatgatcccagcactttgtgaggccaaggctgatggatca
Downstream sequence
cctggggctgggagtttgagaccagtctgaccaacgtggagaaaccccgtctctactaaaaatacaaaattagccaggcgaggtggcgtatgcctgtaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate