Basic Information
VIS ID
TVIS30004461
Fusion event
HIV-OS9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
58103112/57709329 (Hg38)
End
58103112/57709329 (Hg38)
Orient
+
Location type
Intronic
Target gene
OS9
miRNAs that regulate target gene
hsa-mir-362-5p ; hsa-mir-3672 ; hsa-mir-4524a-3p ; hsa-mir-500b-5p ; hsa-mir-501-5p ; hsa-mir-6864-3p
Nearest miRNA
hsa-mir-1228/Upstream/190070; hsa-let-7i/Downstream/39289;
Nearest TSS
ENST00000382841/Upstream/13833; ENST00000550699/Downstream/6377;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/15083, chr12-CpG: 150/Downstream/16797
Upstream sequence
caaatatttttataacttcttcagcgaaatgcttttcaatctgtcttctctcttaattatacacttaaagctctacatttcactctgagtactattttgg
Downstream sequence
ttgcatccctcaaattttagtatgtggtgtttccattttcattatggtttctacgtgcttctgaacttatttagaattatgcttaatatatttctaaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate