VISDB Viral Integration Site DataBase

VIS ID

TVIS30004470

Fusion event

HIV-FBXW8 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.22

Reference genome

Start

End

117395186/116957381 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA12E ; FRA12C

Target gene

miRNAs that regulate target gene

hsa-mir-665 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-1304-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4742-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-5001-3p ; hsa-mir-6762-3p ; hsa-mir-604 ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-1343-3p ; hsa-mir-1587 ; hsa-mir-15a-3p ; hsa-mir-1910-3p ; hsa-mir-1972 ; hsa-mir-1976 ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-3620-5p ; hsa-mir-3621 ; hsa-mir-3653-5p ; hsa-mir-3656 ; hsa-mir-3690 ; hsa-mir-377-5p ; hsa-mir-378g ; hsa-mir-383-5p ; hsa-mir-4254 ; hsa-mir-4257 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4505 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4650-5p ; hsa-mir-4656 ; hsa-mir-4675 ; hsa-mir-4741 ; hsa-mir-4772-5p ; hsa-mir-5001-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6742-3p ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6783-3p ; hsa-mir-6829-5p ; hsa-mir-6852-5p ; hsa-mir-762 ; hsa-mir-939-3p ; hsa-mir-3164 ; hsa-mir-5190 ; hsa-mir-6820-3p

Nearest miRNA

hsa-let-7i/Upstream/529063; hsa-mir-1178/Downstream/2756253;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/46015, chr12-CpG: 23/Downstream/81624

Upstream sequence

ggttgcagtgagccaggatcatgccactgcactccagcttggtgacagcgagactgtctcaaaaaaaaTTTTTTTTTAAAAAAGGACCTTTTTATCGACT

Downstream sequence

GTATACCATGCCAAAATATGAATAGTAGCTTTAATGTGAATACGTATATATTTGCCCTGAATTTAAAAATATTTTCTGTTCGGGAACTGAAGCCCTCAAG