Basic Information
VIS ID
TVIS30004480
Fusion event
HIV-PAN3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
28821905/28247768 (Hg38)
End
28821905/28247768 (Hg38)
Orient
+
Location type
Intronic
Target gene
PAN3
miRNAs that regulate target gene
hsa-mir-148a-3p ; hsa-mir-21-5p
Nearest miRNA
hsa-mir-2276/Upstream/4085264; hsa-mir-1267/Downstream/11416266;
Nearest TSS
ENST00000623511/Upstream/8211; ENST00000380842/Downstream/60666;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/108452, chr13-CpG: 205/Downstream/245883
Upstream sequence
ttattgaagaggccatcttttccccaataggtgttcttggcaccgttatggaaaattagttgcctataaatatgtgtatttatttcaagttctgtgttct
Downstream sequence
gttccattggtctgtgtgtctgtttttatgcaggtaccatactgtttcggttactgtgactttgtaatatattttgaagcaagtagtagatgtctcgtgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate