VISDB Viral Integration Site DataBase

VIS ID

TVIS30004489

Fusion event

HIV-RBM23 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q11.2

Reference genome

Start

End

23377148/22907939 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-93-5p ; hsa-mir-6790-3p ; hsa-mir-6821-3p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-138-2-3p ; hsa-mir-652-5p ; hsa-mir-6807-5p ; hsa-mir-1825 ; hsa-mir-6849-3p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-590-3p ; hsa-let-7c-3p ; hsa-mir-3924 ; hsa-mir-4672 ; hsa-mir-6768-5p ; hsa-mir-561-3p ; hsa-mir-3611 ; hsa-mir-1227-5p ; hsa-mir-7150 ; hsa-mir-3616-5p ; hsa-mir-573 ; hsa-mir-128-2-5p ; hsa-mir-6845-5p ; hsa-mir-128-1-5p ; hsa-mir-6762-5p ; hsa-mir-6508-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4795-5p ; hsa-mir-576-3p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-493-5p ; hsa-mir-377-3p ; hsa-mir-4477a ; hsa-mir-8485 ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-1299 ; hsa-mir-6857-3p ; hsa-mir-4513 ; hsa-mir-6855-3p ; hsa-mir-4738-3p ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-2116-3p ; hsa-mir-501-5p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3679-3p ; hsa-mir-623 ; hsa-mir-4671-3p ; hsa-mir-198 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-5193 ; hsa-mir-6832-3p ; hsa-mir-6840-5p ; hsa-mir-5196-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-7844-5p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-324-5p ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4638-5p ; hsa-mir-6741-3p ; hsa-mir-6812-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-1273c ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4696 ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-1273g-3p ; hsa-mir-330-3p ; hsa-mir-508-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-4635 ; hsa-mir-3663-5p ; hsa-mir-1827 ; hsa-mir-2682-5p ; hsa-mir-3173-3p ; hsa-mir-34b-5p ; hsa-mir-3612 ; hsa-mir-3675-5p ; hsa-mir-4434 ; hsa-mir-4457 ; hsa-mir-449c-5p ; hsa-mir-4516 ; hsa-mir-4531 ; hsa-mir-4661-3p ; hsa-mir-4694-3p ; hsa-mir-4695-5p ; hsa-mir-4698 ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-539-5p ; hsa-mir-5582-5p ; hsa-mir-5680 ; hsa-mir-5703 ; hsa-mir-650 ; hsa-mir-6891-5p ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-4432 ; hsa-mir-616-5p

Nearest miRNA

hsa-mir-6717/Upstream/1884553; hsa-mir-1185-1/Downstream/49011;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/20746, chr14-CpG: 50/Downstream/10944

Upstream sequence

tctgcaggcctaggctcatgtgtctttgtgtcgtagttttcaacaataacaataatgtttaaaaagtaaaagacaaaaaaatttaaaaatagaaaaaagc

Downstream sequence

ttatagaataaggacataaagaaaacttgtagagttgtacaatgtgtttgtgttttaagctaaatgttTCAAttttttatttttatttttattttttttg