Basic Information
VIS ID
TVIS30004494
Fusion event
HIV-CNIH1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
54903107/54436389 (Hg38)
End
54903107/54436389 (Hg38)
Orient
-
Location type
Exonic
Target gene
CNIH1
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-33a-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-3942-3p ; hsa-mir-5701 ; hsa-mir-4509 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-759 ; hsa-mir-205-3p ; hsa-mir-6165 ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-600 ; hsa-mir-513b-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac
Nearest miRNA
hsa-mir-208a/Upstream/487905; hsa-mir-1185-1/Downstream/441724;
Nearest TSS
ENST00000550708/Upstream/27825; ENST00000554046/Downstream/4951;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/38853, chr14-CpG: 90/Downstream/4489
Upstream sequence
CTGGCCATTTTCAAATTACTTCAAGTTAAAAACAAACATATTTTTAAAATCTAAAGATAAATCCTATATTATAACTTACGGGATTCAGGGTATTACACTG
Downstream sequence
GTCTATAGGATTCTTGTAATCAGTCTTCAGCTCATCAAATGCTATAATCTAAAATAAAATTAAAACAGTTAGGACCACTCACTTTAATTAAAAGCAGCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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