Basic Information
VIS ID
TVIS30004496
Fusion event
HIV-FUT8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
65954321/65487603 (Hg38)
End
65954321/65487603 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA14B
Target gene
FUT8
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-34a-5p ; hsa-mir-122-5p ; hsa-mir-26a-5p ; hsa-mir-455-3p
Nearest miRNA
hsa-mir-208a/Upstream/16417; hsa-mir-1185-1/Downstream/1954252;
Nearest TSS
ENST00000550708/Upstream/74534; ENST00000554667/Downstream/715;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/73951, chr14-CpG: 40/Downstream/526012
Upstream sequence
agtgagcagagattgtgccactgcacactccagcatgagcagcagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaCTCAGTTTTTAGTGTCTT
Downstream sequence
CACAGTAGATTTTTTTGTCATTGGCTCTTGCGGCCTTTCTTCTTGTCTCCCCCAGTTCCAGCCCCCCAAAATAGAAGGGCCCATTATCTTGCTCATGATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate