Basic Information
VIS ID
TVIS30004502
Fusion event
HIV-MARK3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.32
Reference genome
GRCh37/hg19
Start
103921929/103455592 (Hg38)
End
103921929/103455592 (Hg38)
Orient
+
Location type
Intronic
Target gene
MARK3
miRNAs that regulate target gene
hsa-mir-331-3p
Nearest miRNA
hsa-mir-1185-1/Upstream/915866; hsa-mir-12121/Downstream/661813;
Nearest TSS
ENST00000550708/Upstream/26399; ENST00000558611/Downstream/10122;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/69221, chr14-CpG: 322/Downstream/65134
Upstream sequence
aagacgggcagatcacttgaggccaggagttcgagaccagcctggccaacgtggtgaaacccccatctctactaaaaatacaaaaattagccgggtgtgg
Downstream sequence
tgacgcacgcctgtaatcccagctactcaggaggctgaggcacgagaattgcttgaacgttggaggcagaggttgcagtgagccaagatcgggccactgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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