Basic Information
VIS ID
TVIS30004505
Fusion event
HIV-STARD9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.2
Reference genome
GRCh37/hg19
Start
42911934/42619736 (Hg38)
End
42911934/42619736 (Hg38)
Orient
-
Location type
Intronic
Target gene
STARD9
Nearest miRNA
hsa-mir-1233-1/Upstream/420070; hsa-mir-10393/Downstream/1173923;
Nearest TSS
ENST00000557528/Upstream/44066; ENST00000568493/Downstream/10106;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/38078, chr15-CpG: 91/Downstream/116781
Upstream sequence
gtgaaaatgtaatgcctctgctgatctgacaggaggcagagctcaggcaatgaagtgagcaatgggagagtagctgtaaatacagatgaagctttacttg
Downstream sequence
ctcctcgcctgcctgcccaccactcacctcctgctgtgtggcctggttcctGGTTGGGGAGCCCTGACTCAAGCTTTACCCAATTTCTTTTGGTTTATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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