VISDB Viral Integration Site DataBase

VIS ID

TVIS30004508

Fusion event

HIV-SECISBP2L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q21.1

Reference genome

Start

End

49312381/49020184 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-148a-3p ; hsa-mir-19b-3p ; hsa-mir-21-5p ; hsa-mir-223-3p ; hsa-mir-4520-3p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-4638-3p ; hsa-mir-4698 ; hsa-mir-3654 ; hsa-mir-409-3p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-454-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-19a-3p ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-33b-5p ; hsa-mir-3143 ; hsa-mir-33a-5p ; hsa-mir-495-5p ; hsa-mir-4803 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-647 ; hsa-mir-6762-3p ; hsa-mir-604 ; hsa-mir-889-5p ; hsa-mir-5197-5p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-548m ; hsa-mir-1275 ; hsa-mir-1293 ; hsa-mir-1343-5p ; hsa-mir-1468-3p ; hsa-mir-3150a-3p ; hsa-mir-3175 ; hsa-mir-3613-3p ; hsa-mir-376c-3p ; hsa-mir-4259 ; hsa-mir-432-3p ; hsa-mir-4483 ; hsa-mir-4651 ; hsa-mir-4665-5p ; hsa-mir-491-5p ; hsa-mir-541-3p ; hsa-mir-548aj-5p ; hsa-mir-548aw ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-571 ; hsa-mir-6077 ; hsa-mir-608 ; hsa-mir-654-5p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6763-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6803-5p ; hsa-mir-6825-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-7109-5p ; hsa-mir-7110-5p ; hsa-mir-7-5p ; hsa-mir-92a-2-5p ; hsa-mir-939-5p ; hsa-mir-1243 ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429

Nearest miRNA

hsa-mir-10393/Upstream/3587055; hsa-mir-11181/Downstream/148886;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/44103, chr15-CpG: 43/Downstream/25982

Upstream sequence

aacaggagggtccttgtgatgatggatctgttctgcatcttgactgtatcgaggccaatatctgggtgtgatattgcactatagttttgcaagatgttac

Downstream sequence

cacaggggggaaactgCATATTACTTGCTTAttttttttagagacgtgatcttgctctgttgcccaggctggagtgcagtggcttgatcatagctcacta