Basic Information
VIS ID
TVIS30004509
Fusion event
HIV-ADAM10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
58887876/58595677 (Hg38)
End
58887876/58595677 (Hg38)
Orient
+
Location type
UTR3
Target gene
ADAM10
miRNAs that regulate target gene
hsa-mir-122-5p ; hsa-mir-155-5p ; hsa-mir-484 ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-451a ; hsa-mir-103a-3p ; hsa-mir-448 ; hsa-mir-655-3p ; hsa-mir-449a
Nearest miRNA
hsa-mir-10393/Upstream/3222643; hsa-mir-11181/Downstream/575506;
Nearest TSS
ENST00000557528/Upstream/8170; ENST00000559745/Downstream/25827;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/529099, chr15-CpG: 125/Downstream/153205
Upstream sequence
ATATTACCACATCTTGATTCGCAGTGGAAAGAGTTCAGTGCATGTATCTCTTTTCAGAAAACATTTAACTTAGACTCAAAATAAAATAGGGCAGTGTGTG
Downstream sequence
TACCTGCCAAAATCCTACCACAGGATAACATTACAAGCAAAAAATTTACATGTTCCAAAGTCTACCACACTCAAGAAGTTACTAAGAACTCTTGCAGAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate