Basic Information
VIS ID
TVIS30004534
Fusion event
HIV-UNKL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1461024/1411023 (Hg38)
End
1461024/1411023 (Hg38)
Orient
-
Location type
Intronic
Target gene
UNKL
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-324-5p ; hsa-mir-125b-5p ; hsa-mir-148a-3p ; hsa-mir-93-5p ; hsa-mir-548c-3p ; hsa-mir-4668-3p ; hsa-mir-6513-3p ; hsa-mir-4280 ; hsa-mir-4282 ; hsa-mir-448 ; hsa-mir-153-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-3978 ; hsa-mir-5571-3p ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-4495 ; hsa-mir-8084 ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-8055 ; hsa-mir-129-5p ; hsa-mir-6807-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p
Nearest miRNA
hsa-mir-3176/Upstream/640746; hsa-mir-11401/Downstream/323962;
Nearest TSS
ENST00000527434/Upstream/2189; ENST00000640283/Downstream/3055;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2589, chr16-CpG: 106/Downstream/2738
Upstream sequence
CATCAACCTGCCTTAACAACACTATggccgggtgtggtggtttgcacctataatccctgcacgttggagaggccaaggtgggaagatcgcttgaggccgg
Downstream sequence
gtaacacagcgagactccatctctacaaaaaaattaaaaatgagccgaggtgtgtggtggctcacacctgtaatcctagcactctgggaggctgcggtgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate