Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30004536
Basic Information
VIS ID
TVIS30004536
Fusion event
HIV-MAPK8IP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1759534/1709533 (Hg38)
End
1759534/1709533 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAPK8IP3
miRNAs that regulate target gene
hsa-mir-320a
;
hsa-mir-5197-3p
;
hsa-mir-6842-3p
;
hsa-mir-6816-5p
;
hsa-mir-3196
;
hsa-mir-3180-3p
;
hsa-mir-3180
;
hsa-mir-4505
;
hsa-mir-5787
;
hsa-mir-4430
;
hsa-mir-3652
;
hsa-mir-4467
;
hsa-mir-566
;
hsa-mir-5580-5p
;
hsa-mir-8072
;
hsa-mir-3960
;
hsa-mir-6720-3p
;
hsa-mir-423-5p
;
hsa-mir-3184-5p
;
hsa-mir-6504-5p
;
hsa-mir-3064-5p
;
hsa-mir-6875-3p
;
hsa-mir-6778-3p
;
hsa-mir-4778-3p
;
hsa-mir-1248
;
hsa-mir-5088-3p
;
hsa-mir-6756-3p
;
hsa-mir-3127-3p
;
hsa-mir-1200
;
hsa-mir-378a-5p
;
hsa-mir-1254
;
hsa-mir-1295b-3p
;
hsa-mir-143-5p
;
hsa-mir-15a-3p
;
hsa-mir-194-3p
;
hsa-mir-2861
;
hsa-mir-3116
;
hsa-mir-3202
;
hsa-mir-3919
;
hsa-mir-4493
;
hsa-mir-4533
;
hsa-mir-4717-5p
;
hsa-mir-5008-5p
;
hsa-mir-504-3p
;
hsa-mir-5698
;
hsa-mir-5704
;
hsa-mir-6499-3p
;
hsa-mir-6770-5p
;
hsa-mir-6777-5p
;
hsa-mir-6825-5p
;
hsa-mir-6889-5p
;
hsa-mir-8065
;
hsa-mir-874-5p
Nearest miRNA
hsa-mir-3176/Upstream/939256; hsa-mir-11401/Downstream/25452;
Nearest TSS
ENST00000527434/Upstream/3154;
ENST00000568271/Downstream/4675;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/2855
,
chr16-CpG: 34/Downstream/30759
Upstream sequence
AGCACCATCACTGGCTGTTGGTTGCCTGGAGAATTGTGGGCAGGCAGATGTAGCAGAGTCAGGGCAGAACCCTTGACGGGTTCTCAGGGCCGCCGTGGAC
Downstream sequence
GGCAGGCACCGGACATTGCTAGCCGCCTACCAGACAGTGCAGTTTCTGGTTGTGCAGGCTCTGATACAAAGTTTTTTAAAACCCTCAAGTTATTTCCCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Bcl-2 transduced CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate