Basic Information
VIS ID
TVIS30004537
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1850566/1800565 (Hg38)
End
1850566/1800565 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3176/Upstream/65499; hsa-mir-11401/Downstream/289630;
Nearest TSS
ENST00000527434/Upstream/5594; ENST00000427358/Downstream/11854;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/7878, chr16-CpG: 19/Downstream/18511
Nearby gene
IGFALS(No orient, 6832)
Nearest cancer related gene
IGFALS(TSG, No orient, 6832)
Upstream sequence
ccacctggggacatgcagtatttcctcctttacctaggacttgcgtctcttgtgtttttgtagattttctatgttgtgctcttgcatgtatttttttcgg
Downstream sequence
ttctttttatatatgattgttgcttttatactattatgcattatcattttctctcctcaatttcatttGCTGTCTGTCAGGGTTGGAATTGTTTTCTAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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