VISDB Viral Integration Site DataBase

VIS ID

TVIS30004541

Fusion event

HIV-PDPK1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

2637376/2587375 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-125a-5p ; hsa-mir-128-3p ; hsa-mir-10a-5p ; hsa-mir-24-3p ; hsa-mir-744-5p ; hsa-mir-423-5p ; hsa-mir-331-3p ; hsa-mir-185-5p ; hsa-mir-17-5p ; hsa-mir-3978 ; hsa-mir-6844 ; hsa-mir-421 ; hsa-mir-4261 ; hsa-mir-1245b-3p ; hsa-mir-4709-5p ; hsa-mir-5683 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-5010-3p ; hsa-mir-4452 ; hsa-mir-8068 ; hsa-mir-4725-5p ; hsa-mir-4680-3p ; hsa-mir-3121-5p ; hsa-mir-3140-5p ; hsa-mir-345-3p ; hsa-mir-4670-5p ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-4639-5p ; hsa-mir-346 ; hsa-mir-654-3p ; hsa-mir-6871-3p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-4477a ; hsa-mir-4680-5p ; hsa-mir-656-3p ; hsa-mir-1183 ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-618 ; hsa-mir-4668-5p ; hsa-mir-651-3p ; hsa-mir-329-5p ; hsa-mir-3942-3p ; hsa-mir-4284 ; hsa-mir-383-3p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-3191-5p ; hsa-mir-2117 ; hsa-mir-4527 ; hsa-mir-6503-5p ; hsa-mir-376c-3p ; hsa-mir-148a-5p ; hsa-mir-493-5p ; hsa-mir-129-5p

Nearest miRNA

hsa-mir-1225/Upstream/55370; hsa-mir-11401/Downstream/898006;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/3456, chr16-CpG: 52/Downstream/15845

Upstream sequence

GGGCAGTGTGTGATGGAGGGCGTGCGTGTTTTCAGGGCTGGGGATCTGTCGCGGGGGCGCCAGGAATCTGCCTTTCCCAATGCTCTTGCCTGCCTGAGAG

Downstream sequence

TGTTTTGATGCTCCAAAAACAAACTTGTGAATTTCTGTTTTATTCCTATTGAGGCAGATGTCTCCTGTGTTCATGACCATTTGTGTTTCTTTTTTGAGGT