Basic Information
VIS ID
TVIS30004542
Fusion event
HIV-FLYWCH1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2966000/2915999 (Hg38)
End
2966000/2915999 (Hg38)
Orient
-
Location type
Intronic
Target gene
FLYWCH1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-92a-3p ; hsa-mir-3152-5p ; hsa-mir-6836-3p ; hsa-mir-7704 ; hsa-mir-615-5p ; hsa-mir-1288-3p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-4442 ; hsa-mir-3687
Nearest miRNA
hsa-mir-1225/Upstream/383994; hsa-mir-11401/Downstream/569382;
Nearest TSS
ENST00000527434/Upstream/1738; ENST00000571580/Downstream/14798;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/3468, chr16-CpG: 498/Downstream/47651
Upstream sequence
tacagtggCCAAGGAAACATATTTTTGATTataaggctgatttcatcatatttggcctgattatgtagtgcagcaatagtactgattcaccagataagcc
Downstream sequence
tacctgagtttgcctgcctggaagtctccataaggaaacttagactttttaaagtctgttgttttggccaggtgccgtggctcacacctgtaatcccagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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