Basic Information
VIS ID
TVIS30004545
Fusion event
HIV-GLYR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4884646/4834645 (Hg38)
End
4884646/4834645 (Hg38)
Orient
+
Location type
Intronic
Target gene
GLYR1
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-877-3p ; hsa-mir-221-3p ; hsa-mir-6818-5p ; hsa-mir-6880-5p ; hsa-mir-7106-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6894-5p ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-6760-5p ; hsa-mir-4779 ; hsa-mir-6873-5p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-8485 ; hsa-mir-4691-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1225/Upstream/163255; hsa-mir-11401/Downstream/797822;
Nearest TSS
ENST00000527434/Upstream/1445; ENST00000592120/Downstream/9267;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/31470, chr16-CpG: 214/Downstream/11960
Upstream sequence
tccgcctccacctcccaggttcaagcaattctgcctctatctcccgagttgctgggactacaggtatgcaccaccacacccagctaatttttatgtttct
Downstream sequence
agtagagacggggtttccctgtgttggccaggctggtcttgaacttctggcctccagtgatccacctgccttggcctcccaaagtgctgggattacaggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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