Basic Information
VIS ID
TVIS30004546
Fusion event
HIV-ATF7IP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
10570118/10476261 (Hg38)
End
10570118/10476261 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATF7IP2
miRNAs that regulate target gene
hsa-mir-181a-5p ; hsa-mir-7-5p ; hsa-mir-3613-3p ; hsa-mir-4775 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-590-3p ; hsa-mir-548c-3p
Nearest miRNA
hsa-mir-1225/Upstream/4843695; hsa-mir-11401/Downstream/830179;
Nearest TSS
ENST00000527434/Upstream/4337; ENST00000535363/Downstream/51941;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/89864, chr16-CpG: 86/Downstream/103762
Upstream sequence
TTAAAGCTAGTACAAAATAGCTGAACAGACTCTCTAAAATAATAAACTCCTTACTTCTAGGAAGGTTTTTGTAAAAATACCAGTAAATAAGGTGACTAAC
Downstream sequence
TGTGAAACACAATACAGAATCTTGTTCATCTTTGTGAAAAGAAAAATATAAGTAAAAGAAATTTCATTTGGAGGATTCATAAAATATATTAGTTACATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate