Fusion event
HIV-SMG1P2 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
30285693/30274372 (Hg38)
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-1225/Upstream/675107; hsa-mir-11401/Downstream/229547;
Upstream sequence
TGTCTTCCTCACAACTATGAAACTAAATTTAAAAGTGGTTAAATGTTTTTTAAAAAATGTAAGAGTATAAAAGAACTAGTGGAAAATATTGATAAGTAAC
Downstream sequence
TGATGTCAGTGTGTGGAAAGGCTTTGTAGAAGGATAAAATGCAAGAAAAGATGCACAAGTAACAGCATCTAGATGCATAATGCTGAAATACAACACTAAA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.