Basic Information
VIS ID
TVIS30004562
Fusion event
HIV-SMG1P2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
End
30285693/30274372 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/675107; hsa-mir-11401/Downstream/229547;
Upstream sequence
TGTCTTCCTCACAACTATGAAACTAAATTTAAAAGTGGTTAAATGTTTTTTAAAAAATGTAAGAGTATAAAAGAACTAGTGGAAAATATTGATAAGTAAC
Downstream sequence
TGATGTCAGTGTGTGGAAAGGCTTTGTAGAAGGATAAAATGCAAGAAAAGATGCACAAGTAACAGCATCTAGATGCATAATGCTGAAATACAACACTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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