VISDB Viral Integration Site DataBase

VIS ID

TVIS30004567

Fusion event

HIV-ZNF785 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p11.2

Reference genome

Start

End

30588632/30577311 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-92a-3p ; hsa-mir-4674 ; hsa-mir-6868-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-6802-3p ; hsa-mir-4437 ; hsa-mir-4778-3p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-378g ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3934-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-552-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6807-5p ; hsa-mir-4252 ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-1912 ; hsa-mir-1295b-5p

Nearest miRNA

hsa-mir-1225/Upstream/73310; hsa-mir-11401/Downstream/297955;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/4799, chr16-CpG: 46/Downstream/5333

Nearby gene

ZNF785(No orient, 3362)

Upstream sequence

gAGTGGCTATTTGGATTCTCCTTTTAAACAGAGTAGCAACTTGAACCAAAAATACTTTTGTTTCTTCAGATCCTATGTTGTAAATCACTTCTCTTTGAAC

Downstream sequence

TAAGTATGCAGAAGACTTAAGAAGATGAAGCTGAACAATAAAAATATTAACTAAACAGATTGAAAGAAACttttttttttttttttttagatggagtctc