Basic Information
VIS ID
TVIS30004571
Fusion event
HIV-MIR5095 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
48599659/48565748 (Hg38)
End
48599659/48565748 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR5095
Nearest miRNA
hsa-mir-1225/Upstream/14402075; hsa-mir-11401/Downstream/1726868;
Nearest TSS
ENST00000527434/Upstream/6087; ENST00000565055/Downstream/37964;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/68850, chr16-CpG: 87/Downstream/244892
Upstream sequence
ttagaaagtgttctctcctcttgcagttcttggaagagactgtgtagaattgatgttcattcttttttagacattttgtagaattctccagtgaaacaac
Downstream sequence
ctgggcctggagatttcttttataggggttcaaaaattatcaattcgatttccttaatagacaattttgaatagccttatagctatttcatatgaagtga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate