VISDB Viral Integration Site DataBase

VIS ID

TVIS30004578

Fusion event

HIV-SNTB2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q22.1

Reference genome

Start

End

69338250/69304347 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-30b-5p ; hsa-mir-34a-5p ; hsa-mir-10a-5p ; hsa-mir-25-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-381-3p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-570-5p ; hsa-mir-624-3p ; hsa-mir-300 ; hsa-mir-1277-5p ; hsa-mir-3680-3p ; hsa-mir-548ag ; hsa-mir-548ai ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-5689 ; hsa-mir-6838-5p ; hsa-mir-548ba ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-153-3p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-3135b ; hsa-mir-124-3p ; hsa-mir-548an ; hsa-mir-5002-5p ; hsa-mir-5582-5p ; hsa-mir-646 ; hsa-mir-448 ; hsa-mir-503-5p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-3649 ; hsa-mir-140-3p ; hsa-mir-106a-3p ; hsa-mir-7641 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-3622b-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-4695-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-5197-5p ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-4266 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-4779 ; hsa-mir-5694 ; hsa-mir-6086 ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-1225/Upstream/1070848; hsa-mir-11401/Downstream/261461;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/116143, chr16-CpG: 80/Downstream/6840

Upstream sequence

AATATAAGTTCCTGCAGTATTTATTAGATAGTTGTAACTGTAAACTCACCTCCCTAGTAGATAAGAGTTTCAGGTTAAATACTGGAACATATATAGGCAG

Downstream sequence

TCAAAAATACTACTTTAAATGTCATTCACCTATTTTAAAGCCATGTTTTAGCACTTTTTAGGCCAAAGAAGGTCTGATAGTGCCTGTTTTTATGTTCTGT