Basic Information
VIS ID
TVIS30004580
Fusion event
HIV-LOC107984138 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
70266466/70232563 (Hg38)
End
70266466/70232563 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA16B
Target gene
LOC107984138
Nearest miRNA
hsa-mir-1225/Upstream/202141; hsa-mir-11401/Downstream/6636373;
Nearest TSS
ENST00000527434/Upstream/58178; ENST00000569099/Downstream/19367;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/43776, chr16-CpG: 138/Downstream/18426
Nearby gene
SMG1P7(No orient, 6530)
Upstream sequence
TTCAAAGCCCATTTTTGTTTCTACAGATGCTATCTTCAAAGCAATTTTCCTATTGATGAAAACTGAAATAACCCATATGAGAAGAATGTTACTTGATACT
Downstream sequence
CTGCCACCCCCAAACATATTTTCTCTTCAAAACTGCATGTAAAGTCAAGGGAATCTTAAAATTATCTTTCCCAGATAAAATAGTCAAAGAAATGCCTTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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