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Viral Integration Site DataBase
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TVIS30004584
Basic Information
VIS ID
TVIS30004584
Fusion event
HIV-GLG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
74591301/74557403 (Hg38)
End
74591301/74557403 (Hg38)
Orient
+
Location type
Intronic
Target gene
GLG1
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-155-5p
;
hsa-mir-21-5p
;
hsa-mir-26a-5p
;
hsa-mir-218-5p
;
hsa-mir-5584-5p
;
hsa-mir-6825-5p
;
hsa-mir-7106-5p
;
hsa-mir-5196-5p
;
hsa-mir-4747-5p
;
hsa-mir-4763-3p
;
hsa-mir-1207-5p
;
hsa-mir-650
;
hsa-mir-3612
;
hsa-mir-766-5p
;
hsa-mir-3202
;
hsa-mir-5093
;
hsa-mir-6722-3p
;
hsa-mir-1909-3p
;
hsa-mir-1827
;
hsa-mir-7515
;
hsa-mir-9500
;
hsa-mir-940
;
hsa-mir-6808-5p
;
hsa-mir-6893-5p
;
hsa-mir-4695-5p
;
hsa-mir-6811-5p
;
hsa-mir-6511b-5p
;
hsa-mir-7847-3p
;
hsa-mir-6880-5p
;
hsa-mir-920
;
hsa-mir-6726-5p
;
hsa-mir-5591-5p
;
hsa-mir-4300
;
hsa-mir-6851-5p
;
hsa-mir-6836-5p
;
hsa-mir-3689d
;
hsa-mir-6132
;
hsa-mir-6086
;
hsa-mir-377-5p
;
hsa-mir-6134
;
hsa-mir-3160-3p
;
hsa-mir-6840-3p
;
hsa-mir-6754-5p
;
hsa-mir-4441
;
hsa-mir-4270
;
hsa-mir-7703
;
hsa-mir-6720-5p
;
hsa-mir-6512-3p
;
hsa-mir-4252
;
hsa-mir-6499-3p
;
hsa-mir-891a-5p
;
hsa-mir-4537
;
hsa-mir-5186
;
hsa-mir-6860
;
hsa-mir-612
;
hsa-mir-5189-5p
;
hsa-mir-3187-5p
;
hsa-mir-1285-3p
;
hsa-mir-4793-3p
;
hsa-mir-766-3p
;
hsa-mir-939-3p
;
hsa-mir-6849-3p
;
hsa-mir-1273g-3p
;
hsa-mir-508-5p
;
hsa-mir-7156-3p
;
hsa-mir-7641
;
hsa-mir-143-5p
;
hsa-mir-3944-5p
;
hsa-mir-3189-5p
;
hsa-mir-4758-3p
;
hsa-mir-5699-5p
;
hsa-mir-4695-3p
;
hsa-mir-4679
;
hsa-mir-4691-3p
;
hsa-mir-194-3p
;
hsa-mir-2682-3p
;
hsa-mir-30a-3p
;
hsa-mir-30d-3p
;
hsa-mir-30e-3p
;
hsa-mir-3677-5p
;
hsa-mir-4276
;
hsa-mir-4493
;
hsa-mir-4757-5p
;
hsa-mir-5693
;
hsa-mir-627-3p
;
hsa-mir-6744-3p
;
hsa-mir-6781-3p
;
hsa-mir-6878-3p
Nearest miRNA
hsa-mir-1225/Upstream/4526981; hsa-mir-11401/Downstream/2311533;
Nearest TSS
ENST00000527434/Upstream/79870;
ENST00000568511/Downstream/5922;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/149910
,
chr16-CpG: 67/Downstream/49167
Upstream sequence
GTGTGCTGAAGTAAAGCTGTGAGACTCAATTAAAGGAAAATTTTAATCATAGAGGTCTTTAGATAGCAAAATAGGCAAGAAGCTCTCTTTAGGTCTGGGG
Downstream sequence
AGAGGCAAGAAGCTCTCTTTAGGTCTGGGGAGGGGCCAGAGCATAGGCTTACTTATGGGTGACCACTTAGCCCAAGAGTGTGAGCAGGTGGAAGTGAGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Bcl-2 transduced CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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