Basic Information
VIS ID
TVIS30004586
Fusion event
HIV-CDYL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
80731686/80697789 (Hg38)
End
80731686/80697789 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA16D
Target gene
CDYL2
Nearest miRNA
hsa-mir-1225/Upstream/3828770; hsa-mir-11401/Downstream/687229;
Nearest TSS
ENST00000527434/Upstream/58053; ENST00000568437/Downstream/37344;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/156596, chr16-CpG: 180/Downstream/105638
Upstream sequence
aacctcttagaactgatgattcagtaaagttgcaggatacaaaatcaacaaaaaagtcacatttctatacaatcgtaacaaactagctgaaaaagaaatc
Downstream sequence
ccatttacagtagctacaaaaacataaaatacctaggaataaatttaaccaaggagatgaaagatctctacaatggaaagaataaaacattggtggaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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