VISDB Viral Integration Site DataBase

VIS ID

TVIS30004587

Fusion event

HIV-SLC7A5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q24.2

Reference genome

Start

End

87883127/87849521 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-626 ; hsa-mir-7-5p ; hsa-mir-663a ; hsa-mir-126-3p ; hsa-mir-193b-3p ; hsa-mir-16-5p ; hsa-mir-296-3p ; hsa-mir-671-5p ; hsa-mir-193a-3p ; hsa-mir-1226-5p ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-205-3p ; hsa-mir-4531 ; hsa-mir-3911 ; hsa-mir-7847-3p ; hsa-mir-223-3p ; hsa-mir-4697-3p ; hsa-mir-504-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-184 ; hsa-mir-574-5p ; hsa-mir-4475 ; hsa-mir-551b-5p ; hsa-mir-548c-3p ; hsa-mir-3611 ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-765 ; hsa-mir-658 ; hsa-mir-6499-3p ; hsa-mir-769-5p ; hsa-mir-6786-3p ; hsa-mir-4734 ; hsa-mir-532-3p ; hsa-mir-1539 ; hsa-mir-1224-3p ; hsa-mir-4302 ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-6854-5p ; hsa-mir-5197-3p ; hsa-mir-1295a ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-1292-5p ; hsa-mir-3135a ; hsa-mir-5008-5p ; hsa-mir-4260 ; hsa-mir-1227-5p ; hsa-mir-3189-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4668-5p ; hsa-mir-7155-3p ; hsa-mir-6797-5p ; hsa-mir-3136-3p ; hsa-mir-1249-5p ; hsa-mir-3148 ; hsa-mir-3202 ; hsa-mir-7515 ; hsa-mir-7160-3p ; hsa-mir-9500 ; hsa-mir-5584-5p ; hsa-mir-4779 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-6834-5p ; hsa-mir-6728-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-5187-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-92b-5p ; hsa-mir-4515 ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4285 ; hsa-mir-3192-5p ; hsa-mir-122-5p ; hsa-mir-7977 ; hsa-mir-493-3p ; hsa-mir-4691-3p ; hsa-mir-449b-3p ; hsa-mir-598-3p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-6734-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-5186 ; hsa-mir-6757-5p ; hsa-mir-5096 ; hsa-mir-29b-2-5p ; hsa-mir-140-3p ; hsa-mir-6823-5p ; hsa-mir-513b-3p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-1237-5p ; hsa-mir-1264 ; hsa-mir-1273g-3p ; hsa-mir-1285-3p ; hsa-mir-132-5p ; hsa-mir-181a-2-3p ; hsa-mir-185-3p ; hsa-mir-1908-5p ; hsa-mir-214-3p ; hsa-mir-219b-5p ; hsa-mir-22-3p ; hsa-mir-24-1-5p ; hsa-mir-24-2-5p ; hsa-mir-296-5p ; hsa-mir-3065-3p ; hsa-mir-3154 ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-3179 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3187-3p ; hsa-mir-3187-5p ; hsa-mir-3196 ; hsa-mir-338-3p ; hsa-mir-33a-5p ; hsa-mir-33b-5p ; hsa-mir-3612 ; hsa-mir-3619-5p ; hsa-mir-3661 ; hsa-mir-3664-3p ; hsa-mir-3689d ; hsa-mir-383-3p ; hsa-mir-3929 ; hsa-mir-3934-3p ; hsa-mir-3937 ; hsa-mir-4264 ; hsa-mir-4267 ; hsa-mir-4270 ; hsa-mir-4271 ; hsa-mir-4419b ; hsa-mir-4435 ; hsa-mir-4436a ; hsa-mir-4441 ; hsa-mir-4443 ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4481 ; hsa-mir-4488 ; hsa-mir-4530 ; hsa-mir-4650-5p ; hsa-mir-4663 ; hsa-mir-4690-5p ; hsa-mir-4697-5p ; hsa-mir-4700-3p ; hsa-mir-4701-5p ; hsa-mir-4704-3p ; hsa-mir-4706 ; hsa-mir-4711-5p ; hsa-mir-4716-3p ; hsa-mir-4722-5p ; hsa-mir-4723-5p ; hsa-mir-4725-3p ; hsa-mir-4745-5p ; hsa-mir-4749-5p ; hsa-mir-4755-3p ; hsa-mir-4781-5p ; hsa-mir-4796-3p ; hsa-mir-4797-5p ; hsa-mir-484 ; hsa-mir-485-5p ; hsa-mir-5000-3p ; hsa-mir-5189-5p ; hsa-mir-5195-5p ; hsa-mir-542-3p ; hsa-mir-548ag ; hsa-mir-548ai ; hsa-mir-548ba ; hsa-mir-548s ; hsa-mir-5698 ; hsa-mir-5700 ; hsa-mir-570-5p ; hsa-mir-586 ; hsa-mir-588 ; hsa-mir-604 ; hsa-mir-6085 ; hsa-mir-6087 ; hsa-mir-612 ; hsa-mir-6165 ; hsa-mir-625-5p ; hsa-mir-631 ; hsa-mir-647 ; hsa-mir-6509-3p ; hsa-mir-650 ; hsa-mir-6512-3p ; hsa-mir-6515-5p ; hsa-mir-665 ; hsa-mir-6720-5p ; hsa-mir-6721-5p ; hsa-mir-6724-5p ; hsa-mir-6731-5p ; hsa-mir-6754-5p ; hsa-mir-6755-5p ; hsa-mir-6760-5p ; hsa-mir-6762-3p ; hsa-mir-6773-5p ; hsa-mir-6777-5p ; hsa-mir-6778-3p ; hsa-mir-6780b-5p ; hsa-mir-6781-5p ; hsa-mir-6787-5p ; hsa-mir-6791-3p ; hsa-mir-6794-5p ; hsa-mir-6813-5p ; hsa-mir-6816-5p ; hsa-mir-6820-5p ; hsa-mir-6821-5p ; hsa-mir-6825-5p ; hsa-mir-6828-5p ; hsa-mir-6829-3p ; hsa-mir-6829-5p ; hsa-mir-6836-3p ; hsa-mir-6846-3p ; hsa-mir-6851-5p ; hsa-mir-6853-5p ; hsa-mir-6860 ; hsa-mir-6870-5p ; hsa-mir-6877-5p ; hsa-mir-6882-3p ; hsa-mir-6884-5p ; hsa-mir-6889-5p ; hsa-mir-6890-3p ; hsa-mir-7111-5p ; hsa-mir-7160-5p ; hsa-mir-761 ; hsa-mir-7851-3p ; hsa-mir-8085 ; hsa-mir-873-5p

Nearest miRNA

hsa-mir-12128/Upstream/14861; hsa-mir-11401/Downstream/4375;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/70057, chr16-CpG: 15/Downstream/11232

Upstream sequence

TTCAACAGCTAACGGAATTATAAACCTATTATGTATTCAAGTCGAACAAAAGCTCTTTGCTCTCCCTACCGAAATTTGTTTTTACAAAAATCACGTTCCC

Downstream sequence

CTCCTAAATCTTTCCTGGCTATCTGATGAGCGCAGCCAAGCAAAGGCCTTCACGAGCAAAGCACCCCTTCCGTGCCCACTTCTGGGAGGCACAGGATGGA