VISDB Viral Integration Site DataBase

VIS ID

TVIS30004589

Fusion event

HIV-CDT1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q24.3

Reference genome

Start

End

88872591/88806183 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-20a-5p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-2110 ; hsa-mir-3153 ; hsa-mir-3926 ; hsa-mir-4476 ; hsa-mir-4493 ; hsa-mir-4667-5p ; hsa-mir-4700-5p ; hsa-mir-4753-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6876-5p ; hsa-mir-8089 ; hsa-mir-96-3p ; hsa-mir-2681-3p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-4731-5p ; hsa-mir-4279 ; hsa-mir-377-3p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-325 ; hsa-mir-6747-3p ; hsa-mir-1228-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6836-3p ; hsa-mir-550b-2-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p

Nearest miRNA

hsa-mir-11401/Upstream/89846;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/1999, chr16-CpG: 137/Downstream/5121

Upstream sequence

GCCAGAAGCTGGTGGAGCATGTCAAGGAGCACCACAAGGTGAGCGGCCCCCGGCCCCGCTGTGTGAAGATGGTGGCACCAGCACTGCCTCAGCACCTAAC

Downstream sequence

CCTGTGCTTGGAGCATCCCTGCCACTCACAGCTTCTCCCGGGATGGAACTGGGCTGGGTTCACCCTGAGCTGAGGGCTGGTGTGCTCAGGGTGCAGCCGC