VISDB Viral Integration Site DataBase

VIS ID

TVIS30004601

Fusion event

HIV-NCBP3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.2

Reference genome

Start

End

3723205/3819911 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4789-3p ; hsa-mir-525-5p ; hsa-mir-6739-5p ; hsa-mir-520a-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-5192 ; hsa-mir-4261 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-3925-3p ; hsa-mir-4693-3p ; hsa-mir-6856-5p ; hsa-mir-766-3p ; hsa-mir-6758-5p ; hsa-mir-4722-5p ; hsa-mir-6165 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-4786-3p ; hsa-mir-4719 ; hsa-mir-4704-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-3121-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6781-5p ; hsa-mir-6877-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-194-3p ; hsa-mir-5698 ; hsa-mir-6071 ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6882-3p ; hsa-mir-3692-5p ; hsa-mir-93-3p ; hsa-mir-103b ; hsa-mir-5693 ; hsa-mir-7705 ; hsa-mir-6854-5p ; hsa-mir-665 ; hsa-mir-4443 ; hsa-mir-6514-3p ; hsa-mir-516b-5p ; hsa-mir-7977 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-5589-3p ; hsa-mir-518c-5p ; hsa-mir-5690 ; hsa-mir-3664-5p ; hsa-mir-514a-5p ; hsa-mir-4714-5p ; hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-339-5p ; hsa-mir-3613-3p ; hsa-mir-4293 ; hsa-mir-4421 ; hsa-mir-4662a-5p ; hsa-mir-4684-5p ; hsa-mir-548c-3p ; hsa-mir-5699-3p ; hsa-mir-593-3p ; hsa-mir-6732-3p ; hsa-mir-6818-3p ; hsa-mir-6849-3p ; hsa-mir-6858-3p ; hsa-mir-6895-3p

Nearest miRNA

hsa-mir-1253/Upstream/1071729; hsa-mir-10226/Downstream/1149791;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/64520, chr17-CpG: 76/Downstream/25933

Upstream sequence

ACTCAGTCATCATACAGGGTACTAGAAATAGGGGCAATTTGCTTTTTAATTTCCTTAATATGGATATAAAAAGTATATGATGAAAATATTTTAAAGTAAC

Downstream sequence

TCAAATTGGAAAAGTGTAACTGTGTAACAGTAAAGTATGTGTAttattattattattttgagacaaagtcttgctctgtcgcccaggttggaatacagtg