Basic Information
VIS ID
TVIS30004608
Fusion event
HIV-NUP88 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
5321453/5418133 (Hg38)
End
5321453/5418133 (Hg38)
Orient
+
Location type
Intronic
Target gene
NUP88
Nearest miRNA
hsa-mir-1253/Upstream/447983; hsa-mir-10226/Downstream/1237307;
Nearest TSS
ENST00000595228/Upstream/18500; ENST00000575711/Downstream/96;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/135286, chr17-CpG: 95/Downstream/1054
Upstream sequence
cggggggggctgaggcagaagaatcgcttgaaactggaaggtggaggttgcggtgagccgagatggcgccattgcactccagcctgggcaacaagagcga
Downstream sequence
aactccatctcaaaaaaaaaaaaaagacacaaaataattataaataattaagttatgattatgtcaaatgctacacagcagtatagaatgttattagaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate