VISDB Viral Integration Site DataBase

VIS ID

TVIS30004617

Fusion event

HIV-COX10 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p12

Reference genome

Start

End

14027240/14123923 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-98-5p ; hsa-mir-19b-3p ; hsa-let-7e-5p ; hsa-mir-19a-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-432-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4764-5p ; hsa-mir-8062 ; hsa-mir-3942-3p ; hsa-mir-5100 ; hsa-mir-509-3p ; hsa-mir-205-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-6819-5p ; hsa-mir-6737-5p ; hsa-mir-6812-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-101-3p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-6073 ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-6890-5p ; hsa-mir-4257 ; hsa-mir-508-5p ; hsa-mir-144-3p ; hsa-mir-4506

Nearest miRNA

hsa-mir-1253/Upstream/580277; hsa-mir-10226/Downstream/1127704;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/54155, chr17-CpG: 29/Downstream/82957

Upstream sequence

AGGTGCATGCAATTTATGTTCAAGAGTAGTTTAAGTATCTTTAATCAGTCCGTTTTAAGTCAAACCATATGATGTTGAGACATAGACATTTTTCCTTTCA

Downstream sequence

GTATCAAGTATTTTTTTTTCCTCAGTGCTCCATATTAGTAGTACCCAGCTGTGAAACTAGGCTTGCCTTTTGTTACTTAAAAGCAGATAAAATGTTTACA