Basic Information
VIS ID
TVIS30004619
Fusion event
HIV-NCOR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
16071510/16168196 (Hg38)
End
16071510/16168196 (Hg38)
Orient
-
Location type
Intronic
Target gene
NCOR1
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-let-7b-5p ; hsa-mir-34a-3p
Nearest miRNA
hsa-mir-1253/Upstream/916500; hsa-mir-10226/Downstream/113818;
Nearest TSS
ENST00000595228/Upstream/45561; ENST00000463810/Downstream/26415;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/167822, chr17-CpG: 118/Downstream/46765
Upstream sequence
ataataagtgtaagttaaaaacaatcattcatcaaattaacaatctttttgttaaacaatagacatgtggtgtcagcaaggataaaaaagaagtggatac
Downstream sequence
ctttatttatttttattttttgagatgaagtctcactcttgtcccccaggctggagtgcaatggcacaatctcagctcactgcaaccaccgcctcccagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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