VISDB Viral Integration Site DataBase

VIS ID

TVIS30004625

Fusion event

HIV-TAOK1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

27823035/29496017 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-425-5p ; hsa-mir-142-3p ; hsa-mir-30b-5p ; hsa-mir-96-5p ; hsa-mir-190a-3p ; hsa-mir-297 ; hsa-mir-466 ; hsa-mir-3941 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-5011-5p ; hsa-mir-6867-5p ; hsa-mir-8485 ; hsa-mir-124-5p ; hsa-mir-490-5p ; hsa-mir-1206 ; hsa-mir-1246 ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-144-5p ; hsa-mir-144-3p ; hsa-mir-1255a ; hsa-mir-1255b-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-503-5p ; hsa-mir-646 ; hsa-mir-6838-5p ; hsa-mir-3908 ; hsa-mir-541-5p ; hsa-mir-374b-3p ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-4533 ; hsa-mir-3177-5p ; hsa-mir-7856-5p ; hsa-mir-18a-5p ; hsa-mir-24-3p ; hsa-mir-18b-5p ; hsa-mir-3190-3p ; hsa-mir-3202 ; hsa-mir-3677-5p ; hsa-mir-4735-3p ; hsa-mir-4795-5p ; hsa-mir-5585-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-1229-5p ; hsa-mir-4295 ; hsa-mir-3658 ; hsa-mir-3666 ; hsa-mir-4476 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6876-5p ; hsa-mir-8065 ; hsa-mir-2392 ; hsa-mir-4320 ; hsa-mir-3653-3p ; hsa-mir-2355-5p ; hsa-mir-625-5p ; hsa-mir-4284 ; hsa-mir-6504-3p ; hsa-mir-125a-3p ; hsa-mir-764 ; hsa-mir-3934-5p ; hsa-mir-1262 ; hsa-mir-4701-3p ; hsa-mir-6736-5p ; hsa-mir-27b-5p ; hsa-mir-3133 ; hsa-mir-4511 ; hsa-mir-511-3p ; hsa-mir-548at-5p ; hsa-mir-4477b ; hsa-mir-4684-5p ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-138-1-3p ; hsa-mir-1244 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-1265 ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-7641 ; hsa-mir-4662a-5p ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-6768-3p ; hsa-mir-6741-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-9-5p ; hsa-mir-3679-3p ; hsa-mir-3145-3p ; hsa-mir-4286 ; hsa-mir-181a-2-3p ; hsa-mir-892c-5p ; hsa-mir-580-5p ; hsa-mir-561-3p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6884-3p ; hsa-mir-512-3p ; hsa-mir-552-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-302d-3p ; hsa-mir-520e ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302e ; hsa-mir-302a-3p ; hsa-mir-520a-3p ; hsa-mir-1290 ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-549a ; hsa-mir-676-5p ; hsa-mir-4661-3p ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-483-5p ; hsa-mir-6894-3p ; hsa-mir-5001-3p ; hsa-mir-378a-5p ; hsa-mir-4763-5p ; hsa-mir-6778-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-4777-5p ; hsa-mir-523-5p ; hsa-mir-526a ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-6837-3p ; hsa-mir-4305 ; hsa-mir-6787-3p ; hsa-mir-578 ; hsa-mir-4753-3p ; hsa-mir-6892-5p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-501-5p ; hsa-mir-6856-3p ; hsa-mir-4475 ; hsa-mir-640 ; hsa-mir-6853-3p ; hsa-mir-1277-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-7106-3p ; hsa-mir-4252 ; hsa-mir-2467-5p ; hsa-mir-637 ; hsa-mir-3162-3p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-942-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-1289 ; hsa-mir-129-5p ; hsa-mir-3672 ; hsa-mir-6864-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-1180/Upstream/105287; hsa-mir-10226/Downstream/621062;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/104998, chr17-CpG: 283/Downstream/70051

Upstream sequence

AAAAAAAGTTTTTTTTAAGTCTTTAATCATGTTAGATTGCATGCTCTAAATCCAACCCCTTTATGGtacacaatgtcataatgaaggttctgagaagtcc

Downstream sequence

ttcgttaaagaaacttgttcatctttgtttagtctaggccttctctaatttcttgaccactgaaccTGtttttttattttttaatttttttgtttatttt