VISDB Viral Integration Site DataBase

VIS ID

TVIS30004632

Fusion event

HIV-SYNRG integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

35959723/37599676 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1180-3p ; hsa-mir-1304-3p ; hsa-mir-3191-5p ; hsa-mir-4284 ; hsa-mir-29b-1-5p ; hsa-mir-4772-3p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-518c-5p ; hsa-mir-6817-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-498 ; hsa-mir-24-3p ; hsa-mir-4783-3p ; hsa-mir-5693 ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6875-3p ; hsa-mir-22-5p ; hsa-mir-1184 ; hsa-mir-5584-3p ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-148a-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-195-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-193b-3p ; hsa-mir-193a-3p

Nearest miRNA

hsa-mir-1180/Upstream/565863; hsa-mir-10226/Downstream/15255;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/86752, chr17-CpG: 69/Downstream/9361

Upstream sequence

caggcgtggtggtatgcacctgtggtcccagctacctgggaagctgaggtgggaggaatgcttgagcctaggtggctgaggctacagtaagctatgactg

Downstream sequence

tgccacttatactccagcctgggcgacagagcaagagactccatctcaaaaataaaaataaaaaaccaaacaaaaTCCTGAGACTTAAATACTTAAGCTG