VISDB Viral Integration Site DataBase

VIS ID

TVIS30004634

Fusion event

HIV-FBXL20 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

37456988/39300735 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-7703 ; hsa-mir-767-3p ; hsa-mir-1178-3p ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-4420 ; hsa-mir-6760-3p ; hsa-mir-4768-5p ; hsa-mir-6817-3p ; hsa-mir-6833-3p ; hsa-mir-6873-3p ; hsa-mir-7110-3p ; hsa-mir-6818-5p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-4468 ; hsa-let-7a-5p ; hsa-mir-3908 ; hsa-mir-511-3p ; hsa-mir-424-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-26b-3p ; hsa-mir-6793-3p ; hsa-mir-1208 ; hsa-mir-4762-5p ; hsa-mir-216b-5p ; hsa-mir-378g ; hsa-mir-4486 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-3925-3p ; hsa-mir-1273g-3p ; hsa-mir-622 ; hsa-mir-508-5p ; hsa-mir-586 ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-3678-3p ; hsa-mir-3194-3p ; hsa-mir-2467-3p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-4684-5p ; hsa-mir-7975 ; hsa-mir-4540 ; hsa-mir-942-5p ; hsa-mir-1251-5p ; hsa-mir-517-5p ; hsa-mir-554 ; hsa-mir-6838-3p ; hsa-mir-624-5p

Nearest miRNA

hsa-mir-1180/Upstream/3226; hsa-mir-10226/Downstream/425760;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/74625, chr17-CpG: 140/Downstream/100378

Upstream sequence

CGCCATCCCAACAAGTTATAACTCTATTTATTCCTCAGTAAACAAATATAAAATGTCTTCACTAAAATAAACATAGATTCAATGTTTCCACTGCAAAAAC

Downstream sequence

AAACTTTTAGTCCTATTTCAAGACCAAAGAGTCCTATTTAGTCCTAGTAATACTAAGTAATTGTATTATTTCAGTGAAATAATCTGGCTCATTCTCAAAA