VISDB Viral Integration Site DataBase

VIS ID

TVIS30004653

Fusion event

HIV-BPTF integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q24.2

Reference genome

Start

End

65887717/67891601 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-877-3p ; hsa-mir-455-3p ; hsa-mir-33b-5p ; hsa-mir-342-3p ; hsa-mir-378a-3p ; hsa-mir-222-3p ; hsa-mir-204-5p ; hsa-mir-181b-5p ; hsa-mir-25-3p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-7855-5p ; hsa-mir-4642 ; hsa-mir-1273e ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-4722-5p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-1273f ; hsa-mir-219b-3p ; hsa-mir-4649-3p ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-4257 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-302f ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-4724-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3121-3p ; hsa-mir-5001-3p ; hsa-mir-891a-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-3677-5p ; hsa-mir-216a-5p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-4317 ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-10226/Upstream/420016; hsa-mir-1250/Downstream/532850;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/65679, chr17-CpG: 151/Downstream/101504

Upstream sequence

CAACACTTTGTTAGTTTGCTTTTTGAGTTATTATTATGTTTGTTACTTGTAAGTTTGTAGCAGCTCTTCCTGTTTTCAAACAGATGAGTTTTTAAACAGA

Downstream sequence

TAACCCAGCATGTTTCAATTTTTTGTGGAATAATAGATGACTCACAGTAAAGTTACAACATATTTTCTTTTAAGTAAAAAACTTAAGGAATAATGATACT