Basic Information
VIS ID
TVIS30004654
Fusion event
HIV-SRP68 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74065153/76069072 (Hg38)
End
74065153/76069072 (Hg38)
Orient
+
Location type
Intronic
Target gene
SRP68
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-320b ; hsa-mir-92b-3p ; hsa-mir-365a-3p ; hsa-mir-320a ; hsa-mir-221-3p ; hsa-mir-3653-5p ; hsa-mir-3140-5p ; hsa-mir-888-3p ; hsa-mir-3912-3p ; hsa-mir-548an
Nearest miRNA
hsa-mir-10226/Upstream/284465; hsa-mir-1250/Downstream/28947;
Nearest TSS
ENST00000595228/Upstream/4945; ENST00000329003/Downstream/2889;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/46495, chr17-CpG: 45/Downstream/3021
Upstream sequence
TTTGACTAAATTAGTTTAAAatatatatataaataaataaatatatatatatataAAATTGCACCAACCTTTAAGTCAAAGTAATACAGCACATAATTTA
Downstream sequence
CAATACAAAATGATATTTCAATACTACTTCAGGggccgggcgtggtggttcacgcctgtaatcctagcactttgggaggctgaggcaggcagatcacttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate