Basic Information
VIS ID
TVIS30004661
Fusion event
HIV-SEPTIN9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
End
75395080/77398998 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10226/Upstream/1944; hsa-mir-1250/Downstream/2308178;
Nearest cancer related gene
SEPTIN9(OG, No orient, 0)
Upstream sequence
GAGCCAGGCAGTAAGCACAGAGGCCAGCTAGTGGGGAGGGAGGGACCCATCCATGAAAAGACACCAAGCATTGAAAGAGAGGAGaggatggttggggacc
Downstream sequence
ggcacacatgtgcattttgcgcagatggccaaggtggtgaggcgccagccacgcagacaactggaggaaggaggagtgccctaggggaggggccagcTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate