VISDB Viral Integration Site DataBase

VIS ID

TVIS30004664

Fusion event

HIV-BIRC5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

76214919/78218838 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-542-3p ; hsa-mir-218-5p ; hsa-mir-708-5p ; hsa-mir-203a-3p ; hsa-mir-335-5p ; hsa-mir-425-5p ; hsa-mir-10a-5p ; hsa-mir-101-3p ; hsa-mir-1301-3p ; hsa-mir-1226-3p ; hsa-mir-484 ; hsa-mir-149-5p ; hsa-mir-30c-5p ; hsa-mir-93-5p ; hsa-let-7b-5p ; hsa-mir-34a-5p ; hsa-mir-195-5p ; hsa-mir-497-5p ; hsa-mir-150-5p ; hsa-mir-16-5p ; hsa-mir-4716-5p ; hsa-mir-26a-1-3p ; hsa-mir-26a-2-3p ; hsa-mir-2113 ; hsa-mir-4703-3p ; hsa-mir-4778-5p ; hsa-mir-485-5p ; hsa-mir-504-3p ; hsa-mir-646 ; hsa-mir-3613-3p ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-3135b ; hsa-mir-6792-5p ; hsa-mir-6884-5p ; hsa-mir-1225-3p ; hsa-mir-1252-3p ; hsa-mir-3662 ; hsa-mir-936 ; hsa-mir-135a-5p ; hsa-mir-135b-5p ; hsa-mir-3940-3p ; hsa-mir-1229-3p ; hsa-mir-1247-3p ; hsa-mir-4490 ; hsa-mir-6511a-3p ; hsa-mir-6511b-3p ; hsa-mir-6765-3p ; hsa-mir-6784-3p ; hsa-mir-6862-3p ; hsa-mir-214-3p ; hsa-mir-1911-5p ; hsa-mir-4797-5p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-636 ; hsa-mir-3119 ; hsa-mir-122-5p ; hsa-mir-2053 ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-1233-3p ; hsa-mir-3943 ; hsa-mir-4311 ; hsa-mir-6875-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-4778-3p ; hsa-mir-4469 ; hsa-mir-1248 ; hsa-mir-6890-3p ; hsa-mir-552-3p ; hsa-mir-494-3p

Nearest miRNA

hsa-mir-10226/Upstream/821784; hsa-mir-1250/Downstream/1488338;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/4292, chr17-CpG: 34/Downstream/13191

Nearest cancer related gene

BIRC5(OG, No orient, 0)

Upstream sequence

actacaggtgcccaccaccacgcctggctaattttttttggtatttttattagagacaaggtttcatcatgttggccaggctggtctcaaactcctgacc

Downstream sequence

tcaagtgatctgcctgcctcggcctcccaaagcgctgagattacaggtgtgatctactgcaccaggcctgggcgtcatatattcttatttgctaagtctg