Basic Information
VIS ID
TVIS30004669
Fusion event
HIV-SLC38A10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
79248733/81274933 (Hg38)
End
79248733/81274933 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC38A10
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10226/Upstream/141625; hsa-mir-3186/Downstream/125783;
Nearest TSS
ENST00000595228/Upstream/22430; ENST00000574472/Downstream/7283;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/12982, chr17-CpG: 18/Downstream/5674
Upstream sequence
AAGTTTCTTAGAAAGAACTAAGTAGCTGCCTGGCCTACATGTGTTACAGTGAAAAAACCCAGCCTCACtttttatttttctttctcttttagacacaggg
Downstream sequence
tctcactttgtagcccaggctggagtatggtggagcggtcatggcccactgcagccttgaactcttggttcaagtgatcctcctgcctcagcctcccgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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