VISDB Viral Integration Site DataBase

VIS ID

TVIS30004673

Fusion event

HIV-CCDC137 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

79636382/81669352 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-130a-3p ; hsa-mir-106b-5p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-450a-2-3p ; hsa-mir-605-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-1910-3p ; hsa-mir-2110 ; hsa-mir-4295 ; hsa-mir-4271 ; hsa-mir-3666 ; hsa-mir-3714 ; hsa-mir-4725-3p ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-6511a-5p ; hsa-mir-6780b-5p ; hsa-mir-6763-5p ; hsa-mir-6857-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-513b-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-223-5p ; hsa-mir-1208 ; hsa-mir-892c-3p ; hsa-mir-4676-3p ; hsa-mir-452-5p

Nearest miRNA

hsa-mir-10226/Upstream/218164; hsa-mir-4525/Downstream/24405;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/2152, chr17-CpG: 152/Downstream/13812

Upstream sequence

cttgtgcctcagcccccccagtagctgggattacaggcctgtgccaccatgcccggctcgtttttgtatttttagtaaaggctgggttttgccatgttgg

Downstream sequence

ccagtctggtttcgaactctggcctcaggtgatccgcccacctcagcctcccaaagtgctgggattacaggtgtgaaccaccatgcctggcAATATGCAT