VISDB Viral Integration Site DataBase

VIS ID

TVIS30004686

Fusion event

HIV-SMAD4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.2

Reference genome

Start

End

48603645/51077275 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26a-5p ; hsa-mir-483-3p ; hsa-mir-18a-5p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-20a-5p ; hsa-mir-92a-3p ; hsa-mir-203a-3p ; hsa-mir-421 ; hsa-mir-146a-5p ; hsa-mir-224-5p ; hsa-mir-125a-5p ; hsa-mir-125b-5p ; hsa-mir-199a-5p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-182-5p ; hsa-mir-130b-3p ; hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-93-5p ; hsa-mir-19b-3p ; hsa-mir-204-5p ; hsa-mir-1260b ; hsa-mir-205-5p ; hsa-mir-452-5p ; hsa-mir-145-5p ; hsa-mir-183-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-551b-5p ; hsa-mir-548c-3p ; hsa-mir-301b-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548t-5p ; hsa-mir-548x-5p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aj-5p ; hsa-mir-548aw ; hsa-mir-548az-5p ; hsa-mir-6715b-3p ; hsa-mir-4528 ; hsa-mir-34a-5p ; hsa-mir-154-5p ; hsa-mir-34c-5p ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-8062 ; hsa-mir-4668-5p ; hsa-mir-1468-3p ; hsa-mir-302a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-888-5p ; hsa-mir-6715a-3p ; hsa-mir-5701 ; hsa-mir-616-3p ; hsa-mir-548au-3p ; hsa-mir-8076 ; hsa-mir-670-3p ; hsa-mir-4799-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-6731-3p ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-5582-3p ; hsa-mir-144-3p ; hsa-mir-574-3p ; hsa-mir-34a-3p ; hsa-mir-31-5p ; hsa-mir-144-5p ; hsa-mir-3661 ; hsa-mir-4783-5p ; hsa-mir-574-5p ; hsa-mir-631 ; hsa-mir-6867-5p ; hsa-mir-933

Nearest miRNA

hsa-mir-1-2/Upstream/950712; hsa-mir-122/Downstream/2159826;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/46312, chr18-CpG: 156/Downstream/118885

Nearest cancer related gene

SMAD4(TSG, No orient, 0)

Upstream sequence

AAAGTATGCTAAACATGGAGAGAAAACTAAGTGAGGGTGGTATTTTGATAACTTGTAGACTTTTTTTTAATTTTAGGGTAAAATTGAACtgtgtgccagg

Downstream sequence

tttcacactgatggggaattttttactgcagagttaaactcctgactatagacttttatgatggaaacacgtggcacCCATCTTCCACGTCTGAAGGCAT