Basic Information
VIS ID
TVIS30004687
Fusion event
HIV-ZNF407 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
72601178/74889222 (Hg38)
End
72601178/74889222 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF407
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1-2/Upstream/2035840;
Nearest TSS
ENST00000575820/Upstream/12017; ENST00000582214/Downstream/170933;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/290494, chr18-CpG: 23/Downstream/198465
Upstream sequence
caggaggaataggctacaccatctaggtaggtgtgtagtaggttgtttcgtctaggtttgtgtaagtgcatgcaggatattctcaccacaatgcagtcgc
Downstream sequence
ctagtcacgcatttcttagaacctgtccctgccattaagcactgcgtagctgtgtctgtctgtctgtctgtctatttacctatgtctgtctgtctatgta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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