VISDB Viral Integration Site DataBase

VIS ID

TVIS30004689

Fusion event

HIV-MED16 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

886827/886827 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-197-3p ; hsa-mir-346 ; hsa-mir-24-3p ; hsa-mir-92a-3p ; hsa-mir-2861 ; hsa-mir-3648 ; hsa-mir-6749-5p ; hsa-mir-6795-3p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-4653-3p ; hsa-mir-5095 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-4438 ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-150-5p ; hsa-mir-6778-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-4493 ; hsa-mir-1915-5p ; hsa-mir-8485 ; hsa-mir-4747-3p ; hsa-mir-4707-3p ; hsa-mir-4755-3p ; hsa-mir-4258 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-6508-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-383-3p ; hsa-mir-6516-5p ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-6087 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-1247-3p ; hsa-mir-4459 ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-20b-3p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-890 ; hsa-mir-1266-5p ; hsa-mir-3617-3p ; hsa-mir-3664-3p ; hsa-mir-383-5p ; hsa-mir-4310 ; hsa-mir-4433a-3p ; hsa-mir-4518 ; hsa-mir-7157-5p

Nearest miRNA

hsa-mir-1302-11/Upstream/73174; hsa-let-7e/Downstream/929332;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/627, chr19-CpG: 45/Downstream/4704

Upstream sequence

GTCATTATTGACATACGGAAACATCCACCCTTCTTTCAACGTGAGTCTTTTAAAAGATGGGGTCTTggctgcgcacggtggctctcgcctataatcccag

Downstream sequence

cactttggggggctgaggcaggtggatcccctgaggtcagcagttcaagaccagcctggccaacacagtaaaagcctgttgctaataaaaaatacaaaaa