VISDB Viral Integration Site DataBase

VIS ID

TVIS30004693

Fusion event

HIV-MIDN integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

1258318/1258319 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-425-5p ; hsa-mir-130b-3p ; hsa-mir-155-5p ; hsa-mir-221-3p ; hsa-mir-93-5p ; hsa-mir-24-3p ; hsa-let-7b-5p ; hsa-mir-187-5p ; hsa-mir-222-3p ; hsa-mir-873-3p ; hsa-mir-1279 ; hsa-mir-2110 ; hsa-mir-548v ; hsa-mir-4271 ; hsa-mir-4487 ; hsa-mir-4667-5p ; hsa-mir-4700-5p ; hsa-mir-4725-3p ; hsa-mir-4731-5p ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-5580-3p ; hsa-mir-6780b-5p ; hsa-mir-6874-5p ; hsa-mir-8089 ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-153-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-1250-3p ; hsa-mir-3607-3p ; hsa-mir-3686 ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-1207-5p ; hsa-mir-1321 ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-4763-3p ; hsa-mir-6754-5p ; hsa-mir-7106-5p ; hsa-mir-7150 ; hsa-mir-7154-3p ; hsa-mir-452-3p ; hsa-mir-631 ; hsa-mir-548t-3p ; hsa-mir-3661 ; hsa-mir-548aa ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4749-3p ; hsa-mir-548ap-3p ; hsa-mir-548as-3p ; hsa-mir-548at-3p ; hsa-mir-6072 ; hsa-mir-6077 ; hsa-mir-548ay-3p ; hsa-mir-6795-3p ; hsa-mir-6826-3p ; hsa-mir-6880-5p ; hsa-mir-6887-3p ; hsa-mir-6891-3p ; hsa-mir-3065-3p ; hsa-mir-4459 ; hsa-mir-4632-5p ; hsa-mir-4722-5p ; hsa-mir-4779 ; hsa-mir-4436b-3p ; hsa-mir-6721-5p ; hsa-mir-6735-5p ; hsa-mir-6871-3p ; hsa-mir-6879-5p ; hsa-mir-7843-5p ; hsa-mir-335-3p ; hsa-mir-329-5p ; hsa-mir-556-3p ; hsa-mir-570-3p ; hsa-mir-590-3p ; hsa-mir-635 ; hsa-mir-1305 ; hsa-mir-3127-3p ; hsa-mir-3141 ; hsa-mir-3160-5p ; hsa-mir-4464 ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-4748 ; hsa-mir-2467-3p ; hsa-mir-6756-3p ; hsa-mir-6774-5p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-203a-3p ; hsa-mir-6801-5p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4742-5p ; hsa-mir-510-5p ; hsa-mir-4796-3p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-3616-3p ; hsa-mir-4524a-3p ; hsa-mir-4428 ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-4736 ; hsa-mir-4768-5p ; hsa-mir-6833-3p ; hsa-mir-6873-3p ; hsa-mir-2355-5p ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-6845-3p ; hsa-mir-500b-3p ; hsa-mir-488-3p ; hsa-mir-6722-5p ; hsa-mir-7854-3p ; hsa-mir-4751 ; hsa-mir-6730-5p ; hsa-mir-5681a ; hsa-mir-4257 ; hsa-mir-578 ; hsa-let-7a-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-106b-3p ; hsa-mir-1252-5p ; hsa-mir-1296-3p ; hsa-mir-152-5p ; hsa-mir-1827 ; hsa-mir-1909-3p ; hsa-mir-191-3p ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-3130-3p ; hsa-mir-3173-3p ; hsa-mir-3179 ; hsa-mir-328-5p ; hsa-mir-3684 ; hsa-mir-4433a-3p ; hsa-mir-4433b-3p ; hsa-mir-4458 ; hsa-mir-4476 ; hsa-mir-4481 ; hsa-mir-4500 ; hsa-mir-4688 ; hsa-mir-4745-5p ; hsa-mir-4761-3p ; hsa-mir-4793-3p ; hsa-mir-5195-5p ; hsa-mir-602 ; hsa-mir-615-5p ; hsa-mir-634 ; hsa-mir-637 ; hsa-mir-6502-3p ; hsa-mir-6722-3p ; hsa-mir-6732-5p ; hsa-mir-6742-5p ; hsa-mir-6743-5p ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6761-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6793-5p ; hsa-mir-6795-5p ; hsa-mir-6798-5p ; hsa-mir-6804-5p ; hsa-mir-6808-5p ; hsa-mir-6828-5p ; hsa-mir-6842-5p ; hsa-mir-6864-5p ; hsa-mir-6876-5p ; hsa-mir-6885-5p ; hsa-mir-6887-5p ; hsa-mir-6891-5p ; hsa-mir-6893-5p ; hsa-mir-7109-5p ; hsa-mir-7110-5p ; hsa-mir-7515 ; hsa-mir-8065 ; hsa-mir-92a-2-5p ; hsa-mir-940 ; hsa-mir-98-5p ; hsa-mir-3184-5p ; hsa-mir-381-5p ; hsa-mir-423-5p ; hsa-mir-4649-5p ; hsa-mir-4737 ; hsa-mir-6729-5p

Nearest miRNA

hsa-mir-1302-11/Upstream/444666; hsa-let-7e/Downstream/557840;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/970, chr19-CpG: 95/Downstream/1946

Upstream sequence

GAGTTCCCCCCTCCGAGCCCTCCTTCCCGGCCCAACCTGAGGGATGTGGATTTGGGACTGTCTGGGGGCCCCTCCTGCAGCGAGGATGGGAGGGGGTGCT

Downstream sequence

GAGCTGTGAATCCCCTGGGCAGGGGGCGACAACTCCGTGTAGCATTAACCCCCGTGGCGGGGTCCGCTGCTGGTCTAATTTGGACCCCCTGCCTCTCAGT