VISDB Viral Integration Site DataBase

VIS ID

TVIS30004695

Fusion event

HIV-TCF3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

1645116/1645117 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-mir-124-3p ; hsa-mir-615-3p ; hsa-mir-342-3p ; hsa-mir-320a ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-506-3p ; hsa-mir-1914-5p ; hsa-mir-3144-5p ; hsa-mir-3191-3p ; hsa-mir-328-5p ; hsa-mir-342-5p ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4651 ; hsa-mir-4652-5p ; hsa-mir-4664-5p ; hsa-mir-5008-3p ; hsa-mir-541-3p ; hsa-mir-5580-5p ; hsa-mir-608 ; hsa-mir-654-5p ; hsa-mir-6737-3p ; hsa-mir-6737-5p ; hsa-mir-6742-5p ; hsa-mir-6747-5p ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6795-5p ; hsa-mir-6803-5p ; hsa-mir-6810-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6842-5p ; hsa-mir-6885-5p ; hsa-mir-6887-5p ; hsa-mir-7110-5p ; hsa-mir-7157-3p ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-1302-11/Upstream/831464; hsa-let-7e/Downstream/171042;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/14052, chr19-CpG: 40/Downstream/1001

Nearest cancer related gene

TCF3(OG, No orient, 0)

Upstream sequence

TATTCCGGCCAGCCCTGTGGCCACTTCCTCACGTAGAGGGGAAGGCCAGTGTGAGGCAGTGGGGGCAGCAAAGCGATGTCTCTCCATGTGGGGGTGCAAG

Downstream sequence

TGCCCAAGTACAGAACCCCCTTTGCCCACCACTCAAAACCCCGACACTCCAGCCAGGGCCCACCCCTGGGGGATTCTGGAGATAACTGCAGGACGGCGCT