VISDB Viral Integration Site DataBase

VIS ID

TVIS30004699

Fusion event

HIV-MOB3A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

2088371/2088372 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-186-5p ; hsa-mir-665 ; hsa-mir-6836-3p ; hsa-mir-4452 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-4314 ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4731-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-4649-3p ; hsa-mir-1298-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3152-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4749-3p ; hsa-mir-6793-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-6818-3p ; hsa-mir-548s ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3655 ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-218-1-3p ; hsa-mir-218-2-3p ; hsa-mir-3180-5p ; hsa-mir-5187-5p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-8069

Nearest miRNA

hsa-mir-1302-11/Upstream/272134; hsa-let-7e/Downstream/145690;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/9860, chr19-CpG: 30/Downstream/7024

Upstream sequence

TGGCAAGGCCGGGGATCTAACTGttcttgtttgctttattttattttttgagacaaagtcttgctctgtcatccaggctggagtgcagtggcacaatcac

Downstream sequence

agcccactccagcctcaacctccggggctcaagcaatcctcccacctcagcctcctgcgtagctgggactcctggcgtgcgtccagataatttttctatt